DreALTA0003047-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000069765 | SYNGAP1 (2 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr16:45673349-45677483:+
Coord C1 exon
chr16:45673349-45673562
Coord A exon
chr16:45676908-45676970
Coord C2 exon
chr16:45676971-45677483
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTCTATGATGGACCTCCAGGAT
3' ss Score
6.51
Exon sequences
Seq C1 exon
TTCAGTGGAGATCACTCGTCTGCCCTCTCCAACTTCTGCCATGTCCAGCGGTGGAGCTCCTCCATCCCGTGCAGGAATGGCTGGGTTTGCGGACCGCGATCATCCTCACCGAGCCTCGTCTAAAGATGTTTTCTATGGTGCCCGTCCCCCACTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGTTCAGATATTACTGATCCAGACCCAAAG
Seq A exon
GATTCCAGAATGAACAGCGTCTCTAACCTGCAGTCTATGGGGGACATGCTCAACTCTTCCCAG
Seq C2 exon
GCCTCGATTGCTGGCCTCGGCAGCTACGGTGGGCTCGCAGGCTTGGGTGGAGGCCTCGGAGGTCAGCTGCGAGCCGGAGGACGTATGTCGGCCGGATCTGGCGGTTCCAGTATGTCCGGGGGTCTGAGGTTGAGCCAGCTGAGCCAGATGGGAACCACTACCGACTCCCTGTCCCAGCAGCAGCAGCAGCAGGCCGCCGCCCTCCGCTTTCCCCTGTCCTTCCAGAACCCTCTGTTCCACCTCGCTGCTGACGGACCGCAGCTTCACCACCAGCACAGTCGAGCTCAGCCTCCTCCTCCGCTCCTGCTGGCCCCAGAGCCGGACGGTTCTCACCCTACTTATATCCCACAGTTTGCACATGGTGGTTTCTCCCGAAGTGAGGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGCCAGCCAAGTATTATTCATTCTCACAGCTACAGCGACGACTACAGCCGTCATAACCAGAGCGACTACGGGCGACGACAGATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069765-16-17,16-16,16-15-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=0.883
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(11.7=100)
A:
NA
C2:
PF120043=DUF3498=FE(28.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGTCCAGCGTACTGTA
R:
GACATACGTCCTCCGGCTCG
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]