DreEX0008567 @ danRer10
Exon Skipping
Gene
ENSDARG00000069765 | SYNGAP1 (2 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr16:45673349-45681810:+
Coord C1 exon
chr16:45673349-45673562
Coord A exon
chr16:45676971-45677483
Coord C2 exon
chr16:45681370-45681810
Length
513 bp
Sequences
Splice sites
3' ss Seq
ACATGCTCAACTCTTCCCAGGCC
3' ss Score
6.71
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TTCAGTGGAGATCACTCGTCTGCCCTCTCCAACTTCTGCCATGTCCAGCGGTGGAGCTCCTCCATCCCGTGCAGGAATGGCTGGGTTTGCGGACCGCGATCATCCTCACCGAGCCTCGTCTAAAGATGTTTTCTATGGTGCCCGTCCCCCACTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGTTCAGATATTACTGATCCAGACCCAAAG
Seq A exon
GCCTCGATTGCTGGCCTCGGCAGCTACGGTGGGCTCGCAGGCTTGGGTGGAGGCCTCGGAGGTCAGCTGCGAGCCGGAGGACGTATGTCGGCCGGATCTGGCGGTTCCAGTATGTCCGGGGGTCTGAGGTTGAGCCAGCTGAGCCAGATGGGAACCACTACCGACTCCCTGTCCCAGCAGCAGCAGCAGCAGGCCGCCGCCCTCCGCTTTCCCCTGTCCTTCCAGAACCCTCTGTTCCACCTCGCTGCTGACGGACCGCAGCTTCACCACCAGCACAGTCGAGCTCAGCCTCCTCCTCCGCTCCTGCTGGCCCCAGAGCCGGACGGTTCTCACCCTACTTATATCCCACAGTTTGCACATGGTGGTTTCTCCCGAAGTGAGGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGCCAGCCAAGTATTATTCATTCTCACAGCTACAGCGACGACTACAGCCGTCATAACCAGAGCGACTACGGGCGACGACAGATCTCCATGCACATGCAG
Seq C2 exon
GAGCAGCAGCAGATGGCAGGCATGGCATCGCAGACTGGCACATCTCATTCATCTCTCGCCACTCCTCCTTCCACTGTTCAACCTGTTCGTCAAAGCTCCATGGCTCCTCCCACGCAGCGCATGAAATCACAACCCTCACATCAGCTTTCTGTGAGCTCTGCCGCTGGTGCCCCTGCGTCCAAAACCAGGCCGCAGAGCGGAAACCTGCTCCAGTCCCCGGAGTCTGGCTTCGGGGGCCGGCAGCAGGGCCCTCGGCAGCAGCTGTCTGTCAAAGACAGCACCCCACCCGGCCTGCCGCATCAACAGAGCTCCACCAGGGAGAGTCAGGGATCCCAGGGCTCTCAGGGTGGAACGCCGCAGTCCACGCAGCAGTCCAAATCACATCAGGAACGGCAGCAGGTCCAGCAACAGCATCTGCTCAAGCCTACCATGAGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069765_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=0.883 C2=1.000
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(11.7=100)
A:
PF120043=DUF3498=FE(28.1=100)
C2:
PF120043=DUF3498=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACTCGTCTGCCCTCTC
R:
AGGGTTGTGATTTCATGCGCT
Band lengths:
342-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]