DreALTA0003292-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000094043 | TTF1 (5 of 6)
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr5:62638155-62638524:+
Coord C1 exon
chr5:62638155-62638362
Coord A exon
NA
Coord C2 exon
chr5:62638510-62638524
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGCTGTTCGGATGTCCTCAGACG
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTCAAAGAAAGGGACCGTGGAATTCAAAGGAGGTGCAGAGGCTTTTAAGGGCTGTGCGTGACTATGTTGTATCTGTGCTGAAGTCTGCAAACCCTAATCAAAGGAAACCAAAAAGAGTCAATAAAGAAATACTGTACAAAAAATTACCCTGGAGCAAAATTGCTGAGCAGGTGAAAACTCGATGCTGGATTACATGCAAAGCGAAATG
Seq A exon
NA
Seq C2 exon
ACGCTATATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094043-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF100704=DUF2309=FE(28.6=100),PF139211=Myb_DNA-bind_6=PD(25.0=20.0)
A:
NA
C2:
PF100704=DUF2309=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]