DreALTA0003292-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000094043 | TTF1 (5 of 6)
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr5:62638155-62638524:+
Coord C1 exon
chr5:62638155-62638362
Coord A exon
chr5:62638478-62638509
Coord C2 exon
chr5:62638510-62638524
Length
32 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TTTTCTACTTTTCCCCTGAGGAT
3' ss Score
3.51
Exon sequences
Seq C1 exon
CTCAAAGAAAGGGACCGTGGAATTCAAAGGAGGTGCAGAGGCTTTTAAGGGCTGTGCGTGACTATGTTGTATCTGTGCTGAAGTCTGCAAACCCTAATCAAAGGAAACCAAAAAGAGTCAATAAAGAAATACTGTACAAAAAATTACCCTGGAGCAAAATTGCTGAGCAGGTGAAAACTCGATGCTGGATTACATGCAAAGCGAAATG
Seq A exon
GATGTCTATACTTGCTGTTCGGATGTCCTCAG
Seq C2 exon
ACGCTATATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094043-7-7,7-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF100704=DUF2309=FE(28.6=100),PF139211=Myb_DNA-bind_6=PD(25.0=20.0)
A:
NA
C2:
PF100704=DUF2309=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]