DreALTA0003664-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100075 | abcg2a
Description
ATP-binding cassette, sub-family G (WHITE), member 2a [Source:ZFIN;Acc:ZDB-GENE-050517-35]
Coordinates
chr23:46081384-46082435:+
Coord C1 exon
chr23:46081384-46081482
Coord A exon
chr23:46082185-46082190
Coord C2 exon
chr23:46082191-46082435
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
TGTGTGTGTGTGTGTGTCAGTAG
3' ss Score
6.33
Exon sequences
Seq C1 exon
GATACACCTGTGAGCCTCATAATAACCCTGCTGATTTCTTCCTGGATGTGATCAATGGAGACTCCAGTGCTGTGACGCTCAACAAGCTCTATGAAGAGG
Seq A exon
TAGTAG
Seq C2 exon
ACCAGGATCAGCTGAGCTCGTCTCTGAAGGGTATCGAGGACCGTCTGGTGGAGGAGTATCAGCGCAGCTCCATCTTCCAGCAGACACACGCTGATCTGCAGCGCATCGTTCAGGGTCAGGATTACAGCACGCGGCCCAAATCCAGAACCATCACCTACAGCACCTCCTTCTGCCATCAGTTCCACTGGGTGCTCAAGAGGACCTTCAGGAACCTGATGCTCAACCCACAGACCTCCGTCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100075-10-13,10-12,10-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0106119=ABC2_membrane=PU(15.1=27.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGTGACGCTCAACAAG
R:
CGCTGATACTCCTCCACCAGA
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]