DreINT0024310 @ danRer10
Intron Retention
Gene
ENSDARG00000100075 | abcg2a
Description
ATP-binding cassette, sub-family G (WHITE), member 2a [Source:ZFIN;Acc:ZDB-GENE-050517-35]
Coordinates
chr23:46081384-46082435:+
Coord C1 exon
chr23:46081384-46081482
Coord A exon
chr23:46081483-46082187
Coord C2 exon
chr23:46082188-46082435
Length
705 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
GTGTGTGTGTGTGTCAGTAGTAG
3' ss Score
2.33
Exon sequences
Seq C1 exon
GATACACCTGTGAGCCTCATAATAACCCTGCTGATTTCTTCCTGGATGTGATCAATGGAGACTCCAGTGCTGTGACGCTCAACAAGCTCTATGAAGAGG
Seq A exon
GTATGATCTCACACACACTTCCCTTCCCTTCACACACATCATCATCATCATCATCGTCATCATTCTGAGCGCTTCTCTGACTCGCAAGGTATACCTGAGGAGCGGTGAGGTAGATAGCTGCTTTCAGGAGGGAGAAGTCAAGAGTTTTGAGATTAAAAAGTTGCTGTTCTCAAAAATGTCCTCAGTCTCAGTTTAATCTGTTTCTTCATGATGCTGAGATCACATCAGTTCTGCTGGAGTCTGATTGGCTGATCATCACTCTCAGGTGTTTGGTTATTGTCAGATAAACGCACAGCTGAAGTAGTTCCGGCAGGTTTAGAGCGCATAACAGCTCCATATCTCTCCACTGTATAAATATATATATATAACAATCAGAACTTTATTTCATTTTCTTTTTAGCTTAGTCCCTTTATTCATCAGGGATCGCCACAGTGGAATGAACCACCAACTATTTCAGCATATGTTTTACACAGCAGATGCCCTTCCAGCTGCAACCCAGTACTGGGAAACACCCATATACACTCATTCACACACACACTCATACACTACGGCCAGTGTAGTTGATCAGTTCCCCTATAGCGCATGTGTTTGGACTGGAAACCGGAGCACCCGGAGGAAACCCATAGTGCTTACTTGTGTGTGGGCATGCATATATACATTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGTAG
Seq C2 exon
TAGACCAGGATCAGCTGAGCTCGTCTCTGAAGGGTATCGAGGACCGTCTGGTGGAGGAGTATCAGCGCAGCTCCATCTTCCAGCAGACACACGCTGATCTGCAGCGCATCGTTCAGGGTCAGGATTACAGCACGCGGCCCAAATCCAGAACCATCACCTACAGCACCTCCTTCTGCCATCAGTTCCACTGGGTGCTCAAGAGGACCTTCAGGAACCTGATGCTCAACCCACAGACCTCCGTCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100075:ENSDART00000159939:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0106119=ABC2_membrane=PU(15.1=27.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGAGCCTCATAATAACCC
R:
CTGAGCGACGGAGGTCTGT
Band lengths:
343-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]