DreALTA0004620-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57661502-57662162:-
Coord C1 exon
chr7:57662064-57662162
Coord A exon
NA
Coord C2 exon
chr7:57661502-57661600
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACTGACCCTCATCCCAGCAGAAC
3' ss Score
6.34
Exon sequences
Seq C1 exon
AAAGGGTTCACACCTTTACATGTGGCCTCAAAGTATGGAAGCCTGGAAGTGGCAAAGCTTCTTTTGCAGCGACGGGCACCTCCTGACTCTGCTGGGAAG
Seq A exon
NA
Seq C2 exon
AACGGTCTCACTCCTCTACATGTCGCTGCACACTATGATAACCAGAAGGTGGCACTCCTGCTCTTGGACAAAGGGGCATCTCCTCATGCCACCGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-27-26,27-25,27-24-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.215
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.7=81.8)
A:
NA
C2:
PF136371=Ank_4=PU(57.4=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGCTTCTTTTGCAGCGA
R:
AGGAGTGCCACCTTCTGGTTA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]