DreALTA0005308-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019062 | arpc5b
Description
actin related protein 2/3 complex, subunit 5B [Source:ZFIN;Acc:ZDB-GENE-040120-7]
Coordinates
chr20:34248985-34249930:+
Coord C1 exon
chr20:34248985-34249093
Coord A exon
NA
Coord C2 exon
chr20:34249859-34249930
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAATATCCT
5' ss Score
-25.19
3' ss Seq
CCTTAACTCCACTCTGCAAAGGG
3' ss Score
-8.3
Exon sequences
Seq C1 exon
GAAAGTGGACGTGGATGAGTACGACGAGAACAAGTTTGTGGACGAAGAAGAAGGAGGAGAAAACCAGCTGGGTCCAGATGAGGCAGAGGTGGATTCTCTCATCAGACAA
Seq A exon
NA
Seq C2 exon
GGGAACCTCATGGGTGCTCTACAGGCAGTATTAAAAAACCCACCAATCAATACAAAGAATCAAAACGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019062-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.329
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0)
A:
NA
C2:
PF046999=P16-Arc=PU(20.0=95.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]