DreALTD0003585-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000019062 | arpc5b
Description
actin related protein 2/3 complex, subunit 5B [Source:ZFIN;Acc:ZDB-GENE-040120-7]
Coordinates
chr20:34248985-34249930:+
Coord C1 exon
chr20:34248985-34249092
Coord A exon
NA
Coord C2 exon
chr20:34249858-34249930
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAATATCC
5' ss Score
-12.05
3' ss Seq
TCCTTAACTCCACTCTGCAAAGG
3' ss Score
-2.22
Exon sequences
Seq C1 exon
GAAAGTGGACGTGGATGAGTACGACGAGAACAAGTTTGTGGACGAAGAAGAAGGAGGAGAAAACCAGCTGGGTCCAGATGAGGCAGAGGTGGATTCTCTCATCAGACA
Seq A exon
NA
Seq C2 exon
AGGGAACCTCATGGGTGCTCTACAGGCAGTATTAAAAAACCCACCAATCAATACAAAGAATCAAAACGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019062-1-1,2-1,3-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.342
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0)
A:
NA
C2:
PF046999=P16-Arc=FE(16.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]