DreALTA0005310-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000035433 | arpc5lb
Description
actin related protein 2/3 complex, subunit 5-like, b [Source:ZFIN;Acc:ZDB-GENE-060531-161]
Coordinates
chr5:31465291-31474499:-
Coord C1 exon
chr5:31474162-31474499
Coord A exon
NA
Coord C2 exon
chr5:31465291-31465362
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TTAACCATCTGTAATGCACAGGG
3' ss Score
-16.58
Exon sequences
Seq C1 exon
TACACTGGAACAGCTCATGTGCTCGTGAGTGCCAGAATAACACACTGAACACACAGCTGCCTTTGATTAATCTAGTCTTCCGTCTGTGGATGTACTCAGTGTGGTGTCCCTGACGCAGACGAGAGCAGCAGAGGCTGAAATCCCGCCCCGGAGCAGAGACAGACGGCACGGGACCGCGGCGGACTGACACTGGCCCCGATGGCCAAGAACACGCTGTCTTCGCGCTTTAGGAAGGTGGACATTGATGAATTCGACGAGAATAAATTCGTGGACGATCACGATGAGGCTGCCGACCAGCAAGGACCGGATGCGCTGGAAGTCGACAACCTTCTCAGGCA
Seq A exon
NA
Seq C2 exon
GGGGACACAATGTCAGCTCTTCACATTGCTCTTAGGAATCCTCCAATCCACAGCAAGAACCCAGCAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035433-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0)
A:
NA
C2:
PF046999=P16-Arc=FE(16.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]