DreALTD0003587-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000035433 | arpc5lb
Description
actin related protein 2/3 complex, subunit 5-like, b [Source:ZFIN;Acc:ZDB-GENE-060531-161]
Coordinates
chr5:31465291-31474262:-
Coord C1 exon
chr5:31474162-31474262
Coord A exon
NA
Coord C2 exon
chr5:31465291-31465363
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
CTTAACCATCTGTAATGCACAGG
3' ss Score
-4.06
Exon sequences
Seq C1 exon
GACATTGATGAATTCGACGAGAATAAATTCGTGGACGATCACGATGAGGCTGCCGACCAGCAAGGACCGGATGCGCTGGAAGTCGACAACCTTCTCAGGCA
Seq A exon
NA
Seq C2 exon
AGGGGACACAATGTCAGCTCTTCACATTGCTCTTAGGAATCCTCCAATCCACAGCAAGAACCCAGCAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035433-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.237
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0)
A:
NA
C2:
PF046999=P16-Arc=FE(12.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]