DreALTA0005702-3/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7582082-7587551:-
Coord C1 exon
chr24:7587444-7587551
Coord A exon
chr24:7582190-7582276
Coord C2 exon
chr24:7582082-7582189
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CAGACCTTGTTTGTATTTAGTCC
3' ss Score
4.78
Exon sequences
Seq C1 exon
GCTGGGATTCAGTCTCTGTTGGTGGTGATAGCTTTAGCCTGTGTGCCAGTTATGCTGGTGGTGAAGACTATGATCCTGCGCCGTCAGCACTTGTGGAAGAAGCACCTG
Seq A exon
TCCCAGATGAGGGATGCAAGACCTGCAGAGAATCTAGAAACTTTAGAGCAGACAGGCACCAGCTCACCCCCCGGACTCACCCAACAG
Seq C2 exon
GGCACACAGAAGTTCGGTGGCGTCCGGGTCGGAAATGGGCCTACGGAGGACGAGGCAGAGATCATTGACCATGACCAGCTCTCACAACACTCAGAGGAAGGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-19-23,19-22,19-21,19-20-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAGCCTGTGTGCCAGTT
R:
TGTTGTGAGAGCTGGTCATGG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]