DreALTA0005702-1/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7582082-7587551:-
Coord C1 exon
chr24:7587444-7587551
Coord A exon
NA
Coord C2 exon
chr24:7582082-7582189
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CCCCCGGACTCACCCAACAGGGC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCTGGGATTCAGTCTCTGTTGGTGGTGATAGCTTTAGCCTGTGTGCCAGTTATGCTGGTGGTGAAGACTATGATCCTGCGCCGTCAGCACTTGTGGAAGAAGCACCTG
Seq A exon
NA
Seq C2 exon
GGCACACAGAAGTTCGGTGGCGTCCGGGTCGGAAATGGGCCTACGGAGGACGAGGCAGAGATCATTGACCATGACCAGCTCTCACAACACTCAGAGGAAGGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-19-23,19-22,19-21,19-20-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTAGCCTGTGTGCCAGTT
R:
TGTTGTGAGAGCTGGTCATGG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]