MmuALTA1005689-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101044516-101048525:+
Coord C1 exon
chr11:101044516-101044623
Coord A exon
NA
Coord C2 exon
chr11:101048418-101048525
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTTCTGTTCGTCTGTGTAGGGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTCATCGTGGTGGCGATGCTCTGCGTCCCTTGGATGCTTCTGTTTAAGCCGCTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTG
Seq A exon
NA
Seq C2 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTTTCCACCCATTCAGAGGACGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-41-38,41-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGCCGCTGATCCTTCGC
R:
GTGGAAAGCTGGTCATGCTGA
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types