RnoALTA0005219-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88948371-88952777:+
Coord C1 exon
chr10:88948371-88948478
Coord A exon
NA
Coord C2 exon
chr10:88952670-88952777
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTTCTGTTCGTCTGTGTAGGGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTCATAGTGGTGGCAATGCTCTGTGTCCCCTGGATGCTGCTGTTTAAGCCGTTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTG
Seq A exon
NA
Seq C2 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-35-39,35-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGCCGTTGATCCTTCGCC
R:
AATGGGTGGAGAGCTGGTCAT
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]