GgaALTA1005553-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4945383-4948820:+
Coord C1 exon
chr27:4945383-4945490
Coord A exon
NA
Coord C2 exon
chr27:4948713-4948820
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
TCTTTTTGTTCATGCATTAGGGA
3' ss Score
5.21
Exon sequences
Seq C1 exon
AAAGGACTCCAGTGTTTCCTTGTGGTGGTGGCATTACTGTGCGTGCCGTGGATGCTGGTAGCTAAACCTCTGGTCCTTCGCCACCAGTATTTAAGGAGAAAGCACTTG
Seq A exon
NA
Seq C2 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-28-35,28-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCCAGTGTTTCCTTGTGG
R:
CTCCTCCCCCTCCTCAGAATG
Band lengths:
213-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]