DreALTA0005746-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21323856-21326215:-
Coord C1 exon
chr24:21325580-21326215
Coord A exon
NA
Coord C2 exon
chr24:21323856-21324000
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
3' ss Seq
CCATCACTCGAACGGTGCAGGAC
3' ss Score
3.47
Exon sequences
Seq C1 exon
TTAATAACTTACTAACCTCAATTTGACCTAGCAAAACAAACCCTTTTGAGAAACAGTAAGTCTCTTCCCTCAGGTGAAATGTCCATCCTGGAAACGAGGAGGAGCAAATGAACAGGAAGCGAATCCTTGCTTGTCAGTGCATGTTCAGTACATTTCGATCCCTAATTGTGAATACAAACAAACAGAAAGACAAACAGACCGACAGACAGAAAGACAGCTGTGGCCCTCGAGCAAGTGCCTGTGCCTTTAAATGGAAGGCTTTTGTGTGGGACTGCGGGGAACGCGTTAGTTAGACGCGGGCAGAGAAAGCGCGGTGTTTGGAGGGAAACCAGCCGTCTTCTGTTACTGCAAAGACACCTCGTAGTGGAGCTTTATGAATGTCCCGAGGCTGACAAATGACCCGGAGCACGCGGGTTTGAGGCTCGTCGTCTGACTGGAATGGGAGAAGTGACGAGCGCCGTCCATCTCTCCACGCCCGCTTTCGATCATGCAGCAGCTGG
Seq A exon
NA
Seq C2 exon
GACCCGCGTGCTCGGCCACCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGGACCACATCACAGGCGGACCCGGTAGATGCCACAGCGCGGACCGTGCTGCTCAACAGAGCCCAGACCACCAAATATTGTGACAACCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-5-4,5-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGAGAAGTGACGAGCG
R:
ATGTGGTCCCGGACATCTCAT
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]