DreEX0016076 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21323856-21354129:-
Coord C1 exon
chr24:21353586-21354129
Coord A exon
chr24:21344923-21345024
Coord C2 exon
chr24:21323856-21324000
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCGGGCTCCTGCAGAAC
3' ss Score
7.43
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTTAAATTTGTAAAAACTAACAAGTTTTAATAATTCATTCATGTTGACCCAACACAAATCAATTGTGTGGAACCCTGCATTTTTTGCAGTGTATTCAATTTTACCCACAGTAATAATTACACAAATAAATACCAGAAGGAGTCCATTGAGGTCCATCCATACCATATGAGGGCGTATTGGCATTCAGAGAAAGTCCAGGCGGGGTCTGCCTCTGATGACGGAACGCGCGCGGATTCGCCTGTGCGTTTGCACGAGCAATAATGCGACGGATCACCAGGATGGCAGAAGCGCGTGCCCGGGCCAGTGCGCGCGCCTGAGGGTGACCCATCATCAATAGGAACTATGTTGCCTCCATCAAACACCGCATCCCTGCGCCTGTGGCCCGCAAACCCCCGCTGAAGCGCGAGTATGCCCACAGCTCGCCCGCGCTGCTGGAAGCTCCACATCGCCGCGCACAATGTATTTCAACCGACGCTCGAAGAAGATCCACAGCGAGGGAG
Seq A exon
AACAGTTAGTGTTGACCCCTCTTAGCCAGGACTCCCCCCTGCGGCAGGACCAGCCCTTGGGCCCCAACATGTGTTCCCGGCTGGCAGACAGGTTTGAGAAAA
Seq C2 exon
GACCCGCGTGCTCGGCCACCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGGACCACATCACAGGCGGACCCGGTAGATGCCACAGCGCGGACCGTGCTGCTCAACAGAGCCCAGACCACCAAATATTGTGACAACCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.629 C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000153695fB1424
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACACCGCATCCCTGC
R:
CTCTGTTGAGCAGCACGGTC
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]