DreALTA0006520-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36459680-36466024:-
Coord C1 exon
chr11:36465891-36466024
Coord A exon
chr11:36459752-36459754
Coord C2 exon
chr11:36459680-36459751
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GACTTGTGTTGATCTGTCAGCAG
3' ss Score
2.27
Exon sequences
Seq C1 exon
GTTACTTTAGTCAGATCTCCACACTGGCTGACGTTCAGGAGAATGTGATGCGGTATTTACATGTGATGAGCAGACCTAAAGTTATCGACCACGAACATGACACAGTGTGGACTGAGGCCTACGTCGACAGCGCA
Seq A exon
CAG
Seq C2 exon
CTTGGAGAGAATAAAGGTCCAAACCCGATGACCACAGTGGCCATGCCTGTGTTTAGCACCAAGAATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-13-17,13-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.521
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.2=17.8)
A:
NA
C2:
PF0274313=Cache_1=FE(23.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACCTAAAGTTATCGACCACG
R:
CTGTGGTCATCGGGTTTGGAC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]