DreEX0018186 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36459680-36466024:-
Coord C1 exon
chr11:36465891-36466024
Coord A exon
chr11:36465318-36465335
Coord C2 exon
chr11:36459680-36459754
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTGTGTCCCTATAGCTC
3' ss Score
11
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTACTTTAGTCAGATCTCCACACTGGCTGACGTTCAGGAGAATGTGATGCGGTATTTACATGTGATGAGCAGACCTAAAGTTATCGACCACGAACATGACACAGTGTGGACTGAGGCCTACGTCGACAGCGCA
Seq A exon
CTCGCACAGGCGCACAAG
Seq C2 exon
CAGCTTGGAGAGAATAAAGGTCCAAACCCGATGACCACAGTGGCCATGCCTGTGTTTAGCACCAAGAATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760-'13-16,'13-15,14-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.553
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.2=17.8)
A:
PF0274313=Cache_1=FE(5.1=100)
C2:
PF0274313=Cache_1=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACCTAAAGTTATCGACCACG
R:
CTGTGGTCATCGGGTTTGGAC
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]