GgaEX1012526 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7818140-7848651:+
Coord C1 exon
chr12:7818140-7818273
Coord A exon
chr12:7838342-7838359
Coord C2 exon
chr12:7848580-7848651
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTGTTGTTTTCCAGCTC
3' ss Score
10.79
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTTTTTTACTCAGATCTCTACCTTAGCTGATGTTCAAGAGAATGTCATGGAATATCTCCATGTTCTTAGCCGACCAAAAGTTATTGACCAAGAGCATGACGTGGTATGGACTGAAGCATATATTGACAGCACT
Seq A exon
CTCCCTCAGGCTCAAAAG
Seq C2 exon
CTTGCTGACGATCAGGGATTGGTGTTGATGACAACTGTTGCCATGCCGGTATTTAGTAAGCAAAATGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.7=17.8)
A:
PF0274313=Cache_1=FE(5.1=100)
C2:
PF0274313=Cache_1=FE(25.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGTTCTTAGCCGACCA
R:
CACCAATCCCTGATCGTCAGC
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]