BtaEX0006799 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46692103-46752470:-
Coord C1 exon
chr22:46752337-46752470
Coord A exon
chr22:46711712-46711729
Coord C2 exon
chr22:46692103-46692174
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCTTATTTTTCAGCTC
3' ss Score
11.99
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGACGTGCAGGAAAATGTCATGGAATACCTCCATGTACTCAGCCGGCCCAAAGTCATCGACCAGGAGCACGATGTGGTGTGGACTGAAGCGTACATTGACAGCACT
Seq A exon
CTCCCTCAGGCACAAAAG
Seq C2 exon
CTTGCTGATGATCAGGGCCCCGTCCTGATGACCACGGTCGCCATGCCTGTGTTTAGTAAGCAGAATGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
A:
PF0274313=Cache_1=FE(5.1=100)
C2:
PF0274313=Cache_1=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTCATCGACCAGGAGC
R:
ACTAAACACAGGCATGGCGAC
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development