MmuEX0008821 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29104954-29170637:-
Coord C1 exon
chr14:29170504-29170637
Coord A exon
chr14:29124666-29124683
Coord C2 exon
chr14:29104954-29105025
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTGGTTTCTCAGCTC
3' ss Score
7.7
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGATGTGCAGGAAAATGTCATGGAATACCTCCATGTGCTTAGCCGACCTAAAGTCATTGACCAGGAGCATGATGTGGTGTGGACCGAAGCGTACATTGACAGCACC
Seq A exon
CTCCCTCAGGCTCAAAAG
Seq C2 exon
CTTGCTGATGATCAGGGCCTCGTCTTGATGACCACGGTGGCCATGCCTGTGTTTAGTAAGCAGAACGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'34-43,'34-40,36-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
A:
PF0274313=Cache_1=FE(5.1=100)
C2:
PF0274313=Cache_1=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTGCTTAGCCGACCTA
R:
AAGACGAGGCCCTGATCATCA
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types