DreALTA0006649-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22324377-22326012:-
Coord C1 exon
chr22:22325792-22326012
Coord A exon
NA
Coord C2 exon
chr22:22324377-22324443
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
ACGACCTCGTGTTTTTTCAGTTT
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTAAAAGCAGAGGAAGAACGCCTGAAGAAAGAAGAAGAAAAGGCTCGGCGAGAATTTATAAAGCAGGAATACTTGAGGAGGAAACAACTGAAACTGATGGAGGACATGGACACGCTTGTCAAACCGCGGCCTACAGGAGCAAAGCAAAGAAAACCACGGCCTAAGTCCATCCATAGAGATGTGATGGAGTCCCCTAGGACTCCTGTCAGGGCCACAGCAG
Seq A exon
NA
Seq C2 exon
TTTCTAGCCTGTCTCTGGCTTCTCTTGGAGATAATGACAGCGTCAACTCCGATAAGAAAACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-20-18,20-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=NA C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAAGAAAACCACGGCCT
R:
CCAAGAGAAGCCAGAGACAGG
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]