DreINT0040934 @ danRer10
Intron Retention
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22324377-22326012:-
Coord C1 exon
chr22:22325792-22326012
Coord A exon
chr22:22324468-22325791
Coord C2 exon
chr22:22324377-22324467
Length
1324 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
GTTTTGTGTTTTGAATGCAGGTT
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTTAAAAGCAGAGGAAGAACGCCTGAAGAAAGAAGAAGAAAAGGCTCGGCGAGAATTTATAAAGCAGGAATACTTGAGGAGGAAACAACTGAAACTGATGGAGGACATGGACACGCTTGTCAAACCGCGGCCTACAGGAGCAAAGCAAAGAAAACCACGGCCTAAGTCCATCCATAGAGATGTGATGGAGTCCCCTAGGACTCCTGTCAGGGCCACAGCAG
Seq A exon
GTAGAGGGTGACCCCCTACTGGCATAGCCCAGTACTGCATGCTTTGTGCTACTCTCAAGCCTTTCCTTTTCCAGCTCGTCTGCATTTCCTTCTAACTTTACTTGCTCAAAATATCTTCCATTCTAACCAGTTTACATATTGTCTGACTAATCTAACAAAGCAGTTCTAATTCCAATCACAATCTGTCTCAAATTCTTTCTTTTTGATACAACCAGCTGTACAAAATATTAAAGTTGTAGTACTATATGACTATATCTCCACAGTCATATTGGGGTGATATAAACACAACAAGTCTCTTTGTTGAAGTTTCCTGGCATTAAAATAGGATCAAAATCCCTCCCATTTTGAGGCCCACTGCAACGTGACGTATGAGTTCGGTTTTCCTGCCCACCGAATTGATTGACAGCAGTGTATTAACTTGTCTCTGTAGTGACGCGTATAATCATGTCAACAAGACAGGACGTGCGCAAAGCAACTGGGATAAAAAGATCTGTTGAGCGCTTTGTGATCGTCAGTTATCATCAAATGTGATCAAGAATGAGTTTTACAAGTTTAAAGCGTTTTTAAAACAGTTCATGTTTGTAATGAATTACAGTGATTTTACCTTCTTTATCACCACAGCCACATGTCTGTACAACTATGTAATATAATAAAAAAACTAAATATATAAAACATATATAAAAAAAATAACAAAAACATAATATAACGGATATCCATACAGCAGTAGATATTAATGTGTATCCTGTCACATTTGCTGTGCAAAAACAGTTTAAAGTAAAACACGTTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGAACTTTGTAACGACATTGTGCGTGACTCATCATTGCAGAAAGGCTTGAATTAACTCCACAACAAATACATCAAATAATCATTGGGAAAGTTCTTACTGTAGTATTTTTCTCAAACGTTACGTGTGATCTGCTACTTTCACGTCTGTCAATGTGCTGTTTATCTGATGCAGCTGAGGCAGAGATTGAGGCACACTCTGACAGACACAATGTTCTGAAAGGTATAATAAATAATCTGATGGGTGTTTTGAGCTGAAATTTAACAGACACATTCTGAAGACACAAAAGTCTTATCTTAAATCTTGAACAAGGGGTAAAATAGTTGCCCTTTAAAGAAGTTTGCAAGATCATTGCAGAGAGCTGTACTGTTATGAGGGTAACACAAAGTTCAGTGGGCTTGCTGTTGTTTTGTGTAACTGTGGGTCCTGTCCCGTTTTGTGTTTTGAATGCAG
Seq C2 exon
GTTCACGACCTCGTGTTTTTTCAGTTTCTAGCCTGTCTCTGGCTTCTCTTGGAGATAATGACAGCGTCAACTCCGATAAGAAAACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173:ENSDART00000142947:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=NA C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAGCAGAGGAAGAACGCCT
R:
CTGGGTGTTTTCTTATCGGAGT
Band lengths:
310-1634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]