MmuINT0028495 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138171378-138173335:-
Coord C1 exon
chr1:138173115-138173335
Coord A exon
chr1:138171451-138173114
Coord C2 exon
chr1:138171378-138171450
Length
1664 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AATTTCTCGTGTTTTTTCAGTCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
ACGAAAAACTGAAGAAGAACGTCAGAAGAAGGAAGACGAGCGAGCACGGAGAGAGTTTATCAGGCAGGAATACATGAGGAGGAAACAGCTGAAACTGATGGAAGACATGGATACAGTAATCAAGCCTCGACCTCAGGCGGCTAAACAGAAAAAACAGCGGCCAAAATCCATTCACAGAGATCATATTGAATCTCCCAAAACACCGATCAAAGGCCCTCCAG
Seq A exon
GTAACCGCAGTTATTTCTGAGGAGTCTGTTCATAAACACCAGCTTGGCTTGTTGTGCTAACTTGACAGTGCTTTGGTAATACTAAAGTGGACACACGGTTTGAGATGATGCATGGTCTTATTTGGAAACCAAAATAAGCTAAGGAAATTTGTATTTAATCGAGGTGCATTGTGTGTGCATGCATATATCCAGTAAATCCAGTGTGAATGCTAAATGTGAATCTGCAGATGTAACAACCTTCCTTCCCCCTGAGACAAGGGCTCATACAGCAGAGACTAACCACAAACGCACCACAAACGTTATAACCAAGGATAACCTTGAACTTCTCATCCTCCTACCTCTGCCCTGTAGTACTGGAATTACAGGCATGAACTGCCTCTTCCTTCTCATGCAGTGTTGGGGATTGGCTCCAGGGCTTTGTACTTGATGGGCAAGGAGTAGTCAACAGCCACACTATGTCCCCAAGGCTTTCACTACTGTTTACAAACATAAATGAGGATGCATGTGATGTGCATGCGCGGTATAGGAGGCATCCCTGTACTTTTGTCCAGGCCCTTCCTGTGAGGTTTAAGGGCTCTGCCATTGACCATTTCCTGAAACATTGATATCCGACAGTAAAGAACATCAGGTCAAGACTGCAAAGGTCCCTCTCTAAGATACAAATAGCCAAAAATCCAAAATTATAATTTCTTGGAGTTGAAAAATTCAATATACATAATTTTTAGCCATTTTATTTAATATAGTACCATGGAAAATTTCCAAGAATTTCTACAGTTAGAGCTGAAGATTAAAAAAGTAGAGGCCTTGCCTAATATCCTTGAGACTCTAGATTTTATCCCTATCACTCCAAAAACTAAGAATTTCTAAAGTTACTCTGGATTGTGGGTGGAGGGGGTAACCTAAACTTGACCAAGCAGTGAAGCTTGGCTTCTCTGCTTGCTCTTCAGCACAAGCCGGCCTCCAGCTAGCAACTCTGCGTCAGTATTCCAAATGCTGAGGCTATAGGAATGAGCCTGGTTTGTTTGGTGAGACTCTTTGATTTATAATATTGGCTGATGAGCTGAGGCGATGGCTGGGACTAGGGTGATAACTCAGTGGTTAGGAGCACTTGCTGCTCTTGCCGAGGACTAGGGTTCAGTTCCCAGCACCCACATAATAGGTCATAACCAGTGGTTCATAATTCCAGGGGATCCAACACAGCCTTCTAGTCTCCGCGGACACCAGGTATACAGGCAGTACATATACATACATGCAGGCAAAATTTAAGAAAATAAAAATCAAAACTAAAAATTGTTGGAAGAAATTTGTAAGCTAATTTTGCACGGAGGAATTAAATATTGCAAAATATATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTAAAAAAAACCTAGTTAGGGTATCAGGTCTCCTGACCACTTTACTTTGGAAACAGGAAGTTAGTTTTATTGTTGCCTAAAACTTGGTTCTTAGTTAAAGTTGTGGATATATGCATGCAACCTACTGTGTGCTTTGATTCAGAGTAAAGAAAAGAGGACATGGCAAAAGCCCAGTTATCTTCGCTGGTGTTATCTGATGAACAGACTCTTTCCTAGTTTCTTCTTTTACAGTTCCAATTTTGTTTTTGTTCAGGATCACGAATTTCTCGTGTTTTTTCAG
Seq C2 exon
TCTCTAGCCTCTCATTGGCATCGCTGAACACAGGTGATAGCGAGAGTGTTCATTCGGGCAAGAGGACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAAACTGAAGAAGAACGTCA
R:
CTTGGCGTCCTCTTGCCC
Band lengths:
294-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: