RnoINT0028780 @ rn6
Intron Retention
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53152514-53154412:-
Coord C1 exon
chr13:53154192-53154412
Coord A exon
chr13:53152587-53154191
Coord C2 exon
chr13:53152514-53152586
Length
1605 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AATTTACCGTGTTTTTTCAGTCT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCGAAAAACTGAGGAAGAACGTCAGAAGAAAGAGGACGAGCGGGCACGGAGAGAATTCATTAGGCAGGAGTACATGAGGCGAAAGCAGCTGAAGCTAATGGAGGACATGGACACAGTAATCAAGCCTCGGCCTCAGGTGGCAAAACAGAAAAAACAGCGGCCAAAATCTATTCACAGAGATCATATTGAATCTCCCAAAACACCAATCAAAGGCCCTCCAG
Seq A exon
GTAACAGCAGTTGTTTCTGAGGAGGTCTGTTCATAAACACCAGCTTGGTTTGCTGTACTAACTTGACAGTGCTTTGGTAATTGGATAGTTTGAGGTGATGCATGGTCTTATTTGGAAAACCAAAATAAGCAAAGGAAATTTATAGTTAATCTGGGTGCATTGTGTGTGCATGCATATATCCAGTAGATCAAATGTGAATGCTAAATGTGAATCTGCAGATGTAACGTCCTTCCCCCTTATCAAGGTCTCATACAGCTTAGGCCAACCTCAGACTCACTGTTTAACTGATCCTCCTACCTCTGCCCTGTAAGTGCTGGAGTTTCAAGCGTGTACTACCACTCCCTGTCTAATGTAGTGTTGGGAATTGAATCCAGGGCTTTGTGCTTGATAGGCAAGTAGTGTTCAAGCAGCTACACTATGTCCCCGATGCATTAACTACTTTCTAAAAACATAAATTGAGGATAAATGTCATGTGCATGGAAGGTATAAGAAACATACCTGTACTTTTGTTGTCACTGTTCTAGAGGACCTAATCCAGGACTTTACACGTGAGGTCTAAGATCGCTGCCATTGGCTCTTTCCTTACACATTGCTATCTGGACAGTTAAGAACATCAGCTCAAGATTTCAAAAGTCCCCCCCTTTAAGATACAAATAGTCGAAAATCCAAAATTAGAATTTTTTGAAAAATTTAATATACATAATTTTTAGCCATTTTATTTAATGTAGTACCATGGAAAATTTCCAAGAATTTCTACAGTTAGAGCTAAAGATAAAAAAGTAGAGGCCTTGCCTAATATCCTCGAGGCTCTAGATTTTATCCCTGTCACCCTAATACTAAACAAGAACTTCTGTATTATTCTGGAGTGGGGGTAACCTAAAATTGACTGGGCAGTGAAGCTTGGCTTGTGTGCCTGCTCTTCAGCACAGGCTGGCCTCCAGCTGGCCATTCTGCTCCAGTACTACATGTCCTGAGGCTGCTATAGGCATGAGCCTGGCTTGGTGAGACTCTGGTATACAGTACTGGCTGATGTGCTGGAGAGATGGCTGGGACTAGCGCGATAACTCAAAGGTAAGAGCACTTGCTGCTCTGCAGGGCTAGGGTACAAGTCCCAGCCCACACAGTAGTTCACAACCCGCAGTTCATAATTCCAGGGGCTCCAGCACCACCCTCTTCTAGCCTTCGTGGACACCAGGATACAGGCAGTACATATCATACATGCAGGCAAAAATTCGTGTAATGAAAATCAAAACTAAAAAACACTGGAAGAAAACTGTAAGCTAATTTTGCACAGAGGAATTAGATATTGCGAAATATGTTTCTTTCTTGAAAAAGACTTGATCAGGGTATCAGGTCTCCTGTTACCACTTCACTTTTGAAATAGCAAGTTAGTTTTATTGTTGCCTAAAACTTGATTCATAAGTTGTGGATATATGCATGGGACATACTGTGTTCTAGGATTCAGAGTAAAGAAAAAAAAAGAAATAACAAAAGTCCAATTATCACTGCTGGTGTTAGCTAATGAACAGACTCTTTTCTAGTTTCTTTTTTTACATTTCCAATTTTGTTTTTGTTCAGGATCACGAATTTACCGTGTTTTTTCAG
Seq C2 exon
TCTCTAGCCTCTCTCTGGCATCGCTGAACACAGGTGATACCGAGAGTGTTCATTCAGGCAAGAGGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741:ENSRNOT00000060410:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAAAACTGAGGAAGAACGT
R:
CTTGGTGTCCTCTTGCCTGAA
Band lengths:
294-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]