GgaINT0036854 @ galGal4
Intron Retention
Gene
ENSGALG00000002145 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr8:1369496-1370840:-
Coord C1 exon
chr8:1370620-1370840
Coord A exon
chr8:1369569-1370619
Coord C2 exon
chr8:1369496-1369568
Length
1051 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GCTTTATCGTGTTTTTTCAGTAT
3' ss Score
8.04
Exon sequences
Seq C1 exon
ACGCAAAACAGAAGAAGAACGTCAGAAGAAGGAGGATGAACGAGCACGGCGAGAATTCATTAAGCAGGAATACATGAGAAGGAAACAACTAAAGCTTATGGAAGAAATGGATACTGTTATAAAACCACGTTCCCTGTCAATCAAACAAAAAAAGCCACGTCCAAAATCTATTCATAGGGATCACATTGAGTCACCTAAGACACCGGTCAAAGGTCCACCAG
Seq A exon
GTAACCCATGTTCATGTGGAGGAAGAGTCTGTTCATGCTAAAACACCAGCTTAGATTTTGGCACTAACAAGCACGTGCGTTTAGAAGTGTCTTGTGCTAAGCTGAAACTGCACGTGTCAAAACTGGAGAGCAACGTTTGTCAATAAGAATGAAAGTATGAATGTCACTTACCTGTTATGCATGCATGCATATGACAAGAAACAGATTTTTAACTGTATGAAAACCTGTAGAAAAACCAATTTATGCAACAAATTTTGTACACCCATGTATATTCTTACCAGTCACTAATCTCTTCTTGCAGCTGACAAACTAAGAATGAATAACTCTTGGCAGAAAGGAGGTCGATAAATAAAATGATCACTATAAAGTAAGAGTACTTAGGCTCCTGCTTAGTACAGCCAGAATTACATTTTACTTCAATGTTTTCTCTTTTTAGTCAGTTTCACTTGCTCAGCTACTGCACGTGTAGTTATGAGCATCATAGCAGCAGCAGTCATGTGGAACAGCTGATTTAGAAATGAAAAGACTGCAGTAGTGACTGAAAGAAATGTTGCCAATTTCCAATTAGAAAAAAGTAACTGGACTACTCTGTTACCCTTTTTTGTTATAGCCTTGTTATGTTACTGGATTTTCTCTAGCAGCTTCCATCCATCTTCCAACGAAATTTAAACTATTTCATTAACACCTTCCAAGAGTCCAGCGTAAGCTTTAAATTGTATCTCTGAAGTTTTTTTTTTTAATGAGGGCTTTTTAACTTTTATTGCACTCTTTGATTTGCTTAGTGCCCATGTTCATGCTTCACATTAATGCTTAGTTGCAGACTACTCTAGATGGCTGCAAATACCTGGGTGTCAGAAAGTGTTGAGAATACAGTGCACCAAATATGCATGCAGGTATATCATGTACTGGAGTAAGAGCTGCGTATACAAAAGCACTTAGTAACTTCTGGATGCTGGTGTTGGGTCTAATGAACAGACTCTGCTACTTGTATAGGTTTTTAAGCCTTAACTTTGTTTTTATCCAGGTTCACAGCTTTATCGTGTTTTTTCAG
Seq C2 exon
TATCTAGTCTTTCACTGGCATCGCTGAATACAGGGGACAATGAGAGTGTGCAGTCAGGCAAGAGAACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145:ENSGALT00000003364:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAAAACAGAAGAAGAACGT
R:
CTTGGCGTTCTCTTGCCTGAC
Band lengths:
294-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]