RnoALTA0006711-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53152514-53154412:-
Coord C1 exon
chr13:53154192-53154412
Coord A exon
chr13:53152587-53152613
Coord C2 exon
chr13:53152514-53152586
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CCAATTTTGTTTTTGTTCAGGAT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCGAAAAACTGAGGAAGAACGTCAGAAGAAAGAGGACGAGCGGGCACGGAGAGAATTCATTAGGCAGGAGTACATGAGGCGAAAGCAGCTGAAGCTAATGGAGGACATGGACACAGTAATCAAGCCTCGGCCTCAGGTGGCAAAACAGAAAAAACAGCGGCCAAAATCTATTCACAGAGATCATATTGAATCTCCCAAAACACCAATCAAAGGCCCTCCAG
Seq A exon
GATCACGAATTTACCGTGTTTTTTCAG
Seq C2 exon
TCTCTAGCCTCTCTCTGGCATCGCTGAACACAGGTGATACCGAGAGTGTTCATTCAGGCAAGAGGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-24-29,24-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGTGGCAAAACAGAAA
R:
GTTCAGCGATGCCAGAGAGAG
Band lengths:
120-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]