BtaALTA0005524-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81323419-81326077:+
Coord C1 exon
chr16:81323419-81323639
Coord A exon
chr16:81325978-81326004
Coord C2 exon
chr16:81326005-81326077
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AATTTCTAATTTTTGTTCAGGAT
3' ss Score
7
Exon sequences
Seq C1 exon
GCGCAGGACGGAGGAGGAGCGGCAGAAGAAGGAGGACGAGCGGGCGCGCCGTGAGTTCATCCGGCAGGAGTACCTGCGGCGCAAGCAGCTGAAGCTCATGGAAGACATGGACAGCGTCCTCAAGCCCCGGCCTCAGGTGGCCCGGCAGAAGAAGCAGCGGCCCAAGTCCATCCACAGGGACCACCTCGAGTCCCCCAAGACGCCCGTGAAAGGTCCCCCAG
Seq A exon
GATCACAAATCTGTCGTGTCTTTTCAG
Seq C2 exon
TCTCGAGCCTTTCTCTGGCATCACTGAACACGGGCGATAACGAAAGCTTGCAGTCAGGGAAGAGGACCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-20-25,20-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCAGCGGCCCAAG
R:
TTCGTTATCGCCCGTGTTCAG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development