HsaALTA1019543-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000118200 | CAMSAP2
Description
calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr1:200853275-200854889:+
Coord C1 exon
chr1:200853275-200853495
Coord A exon
chr1:200854790-200854823
Coord C2 exon
chr1:200854824-200854889
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTGATTTTGTTTTTATTCAGGAT
3' ss Score
9.76
Exon sequences
Seq C1 exon
GCGTAAAACTGAGGAAGAACGTCAGAAGAAAGAAGATGAGAGAGCACGCAGAGAATTTATTAGGCAAGAATATATGAGGCGGAAACAACTGAAACTAATGGAAGATATGGATACAGTAATTAAACCCCGTCCTCAAGTAGTAAAACAAAAAAAACAGCGACCAAAATCTATTCACAGAGATCATATTGAATCCCCCAAAACACCAATAAAGGGTCCTCCAG
Seq A exon
GATCATGAATTTATCGTGTTTTTTCAGTCTCTAG
Seq C2 exon
CCTTTCTTTGGCATCGCTGAACACGGGTGATAACGAGAGTGTACATTCAGGCAAGAGGACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118200-36-42,36-41,36-40-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF116003=CAF-1_p150=PD(22.9=80.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGTCCTCAAGTAGTAAA
R:
CGTGTTCAGCGATGCCAAAGA
Band lengths:
123-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains