DreALTA0006730-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50511004-50511723:-
Coord C1 exon
chr5:50511688-50511723
Coord A exon
NA
Coord C2 exon
chr5:50511004-50511046
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TACTTACATTTTATCCACAGCTG
3' ss Score
7.9
Exon sequences
Seq C1 exon
AACTCAGGAGAGAGTTCCTTGCTGAGTTCATTTGAG
Seq A exon
NA
Seq C2 exon
CTGAAAAGTAGCGAGGAGGAGTCCAGGGAAAGGGGTGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672-7-10,7-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF115593=ADIP=PD(8.3=75.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGAGAGAGTTCCTTGCT
R:
TTTCACCCCTTTCCCTGGACT
Band lengths:
75-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]