DreEX0018940 @ danRer10
Exon Skipping
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50510880-50512316:-
Coord C1 exon
chr5:50512128-50512316
Coord A exon
chr5:50511688-50511723
Coord C2 exon
chr5:50510880-50510923
Length
36 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGTTTACTCCTCAGAAC
3' ss Score
6.7
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTATTTGTACGAGAGAGGAGTACCATCTGGAAAACTCAAAAAATCTCCAAGACAAAGACCAGTACCGCAAGCAGATCCGGGAAATGGGAGAACGCTATGATGAACTTCAAGTCCAGTTGTTTCGAACTCAAGGAGAAGTTCTTGCTCTTCAAGCTACACTTCGCAAACAGAAGAGCCCCATTCGAGTG
Seq A exon
AACTCAGGAGAGAGTTCCTTGCTGAGTTCATTTGAG
Seq C2 exon
ATATGAGTGAAGAGTCACAGAGCCAGACATCCGGCGAGTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.417 C2=0.867
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(56.9=100)
A:
PF115593=ADIP=PD(8.3=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTGTTTCGAACTCAAGGA
R:
ATTGAACTCGCCGGATGTCTG
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]