DreALTA0007920-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000013351 | cirbpb
Description
cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]
Coordinates
chr22:18520516-18521296:-
Coord C1 exon
chr22:18521224-18521296
Coord A exon
NA
Coord C2 exon
chr22:18520516-18520624
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TCAACATTTTTTTTTTTCAGGTT
3' ss Score
11.5
Exon sequences
Seq C1 exon
GTGCTCTTTCTCATTCTGCCGCAGTCGGCGACGCGCTGTACAACCGTCCTGTGTGTTCAACAGAAACTCTGAG
Seq A exon
NA
Seq C2 exon
GTTATCATCATGTCTGACGAGGGAAAGCTTTTCATCGGTGGTCTGAGCTATGATACAACAGAACAGTCCTTGGAGGAAGCATTCTCCAAATATGGAACCATTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013351-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(36.6=70.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCATTCTGCCGCAGTCG
R:
CCACCGATGAAAAGCTTTCCCT
Band lengths:
108-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]