MmuALTA1034710-1/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000045193 | Cirbp
Description
cold inducible RNA binding protein [Source:MGI Symbol;Acc:MGI:893588]
Coordinates
chr10:80167778-80169916:+
Coord C1 exon
chr10:80167778-80167916
Coord A exon
NA
Coord C2 exon
chr10:80169808-80169916
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CATCTATGGTGTGTGCATAGGCT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GGGTTAAGGGGCGTGGCTCCAGGAGTGGAGTATATCAGGCGGGACTCTTGCGCTCCCCCTCGCACTCGCGCCTTAGGAAGCTTGGGTGTGTGTGGCGCGCTGTCTTCCCGCTCGCGTCAGGGACCTGCCCGACTCAGCG
Seq A exon
NA
Seq C2 exon
GCTGCCATGGCATCAGATGAAGGCAAGCTTTTCGTGGGAGGACTCAGCTTCGACACCAACGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045193-2-10,2-9,2-8,2-7,2-6-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=77.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAGGAAGCTTGGGTGTG
R:
CTCGTTGGTGTCGAAGCTGAG
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types