DreALTA0008047-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9236583-9238890:+
Coord C1 exon
chr19:9236583-9236850
Coord A exon
chr19:9238541-9238799
Coord C2 exon
chr19:9238800-9238890
Length
259 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTTTGTGACTTCTTGTCAGGGT
3' ss Score
6.29
Exon sequences
Seq C1 exon
CTACGACAACCGTTCTTCAGACCGCAGGCCATACGACAGACACTACGGCGAGAGCTACCGGCGCTTGGACCACAGCAGGGAACGGGACAGGGATCAAAACAGGGATCACCGGACGCCGAGCAACTACTACTCTCGCGACGCCTCGCCCAGCTACGACTTTCGCCGGGGACGCGACCGGGACCGCGAGGACTCATACCGGAGGAAAGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCGCATCCTCCTCG
Seq A exon
GGTTGCTAGGCTGAGGGATGAGTGGGGAGAATGTAAGCAAGCAAGAAGGGAGGGGTAAAATGTTATCTTTGACTTGATCCCTTGCACTATATCCCTATCGTTATATATATCTCCTCACGTGGTGTCATACGAATCGCCCCATGACCACCAAACCTACCTACAACATCAACTACAACACTGCTCGTCTTCGTCACCGTGGCTGCCCCCCTGCACTCTCCCGCTCCCCCTCCTCCTGACCTCTGACCTGTGGCCCAAGCAG
Seq C2 exon
CGGAGTGACAGCGGGACGAGGGCACTGTGTGTGAGGGACGACGAGGAGGGTCACCTGATCTGTCGGAGTGGCGACGTCCTGCAAGAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954-2-8,2-7,2-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.287
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGACAGACACTACGGCGA
R:
ACTCCGACAGATCAGGTGACC
Band lengths:
307-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]