DreALTA0008686-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9686983-9689247:-
Coord C1 exon
chr3:9689065-9689247
Coord A exon
NA
Coord C2 exon
chr3:9686983-9687309
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CGTCTCTCCCCCTCTAGCAGCAG
3' ss Score
5.49
Exon sequences
Seq C1 exon
ATGGTTATGTCTCCTTCCAGAATGCCGCAAGCTCAAGCCATGATGGGAGGACATGCTAATAACATGGTGGGCCAGACACCCAACCAGAACCAGTTCATGAACCAGACACCGTTCCCAGCCTCGGCCGGGGGCATGAATGTGAATGTAAACCTGGCCCAGCAGTCAGGACAGACTGTCCAACAG
Seq A exon
NA
Seq C2 exon
CAGCAGCAGAACGCTAACCTGACCCTGAACGCTGTGGGCTCTCTGGGCCCGCCGTCCGCCCTGTGCTCCACCCCTCCTCCGCCCTCCGCCTCCACCCCGTCAGCCGCTGCCAGCCTGCAGTCACTCCAGACCCAGCCCTCCACGCCAGCCTCCGTCGGGGGCCACGTCACGCCCACCCACATCCCCAGCGGCCTGCCCCGTCCTCCCTCTGTCCTGGGCTCCTCCCCTGCCCCGTCCCAGCCGCACACACCCTTGCAGTCCCAGCCTGAGCCCCCCATGCAGATGCAGCAGCCCACCTCTGTGCAAGCGCAGCAGCCAAGCACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148-13-15,13-14,13-13-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGCATGAATGTGAATGT
R:
CAGCGTTCAGGGTCAGGTTAG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]