GgaALTA0004042-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13227572-13229359:-
Coord C1 exon
chr14:13229171-13229359
Coord A exon
NA
Coord C2 exon
chr14:13227572-13227985
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
AATCTCTTTCCCTCCAGCAGGGG
3' ss Score
6.84
Exon sequences
Seq C1 exon
ATGGCAATGTCTCCTTCCCGAATGCCTCAGCCACAGAACATGATGGGAGCCCATTCCAACAACATGATGGGTCAGGCTCCTACCCAGAACCAATTCCTGCCCCAGAATCAGTTTCCAGCTTCCACAGGGGCTATGAATGTGAACAACGTTGGCATGGGCCAGTCAGCAGCCCAGGCAGGGGTGGCACAG
Seq A exon
NA
Seq C2 exon
GGGCAGGTTCCCAGTGCTGCTCTTCCCAACTCCATGAACATGCTAGGACCACAGAGTGGTCAGCTATGCCCACCAGTGACCCAGCCGCCTCTGCATCAGACTACACCTCCTGTGTCCACTGCTGCTGGGATGCCGCCTATTCAGCACCAAACACCAACTGGAATGACTCCTCCTCAGCCAGCAGCACCCACTCAGCCATCCACACCAGTCTCATCTTCAGGACAAACCCCTACACCGACCCCGGGTTCTGTTCCCAACGCGACCCAGACACAAAGCACGCCTACGGGACAGACTGCAGCACAGGCTCAAGTCACACCGCAGCCTCAGACCCCAGTTCAGCCCCAGTCTGTGCCAACCCCACAGCCTTCCCAGCAACAGCCAACATCTGTGCAGGCACAGCCACCTGGCACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-13-17,13-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCACAGGGGCTATGAA
R:
GAGTTGGGAAGAGCAGCACTG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]