DreALTA0010044-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63040438-63042752:+
Coord C1 exon
chr5:63040438-63040449
Coord A exon
chr5:63042579-63042581
Coord C2 exon
chr5:63042582-63042752
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATATCAATATGTACCCTCAGCAG
3' ss Score
3.97
Exon sequences
Seq C1 exon
GACAAAGAGAAG
Seq A exon
CAG
Seq C2 exon
AGTGACACCAGTGACGAGAGCAGCTCGGATGGCTTCATGCACTCCATGGATCCTCAGCTTGAGAGGCAGGTGGAGACCATCAGAAACCTTGTGGATTCCTACATGGCCATTGTCAACAAGACTGTGCGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281-19-21,19-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0221213=GED=PU(41.3=66.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]