DreEX0027756 @ danRer10
Exon Skipping
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63039857-63042752:+
Coord C1 exon
chr5:63039857-63039968
Coord A exon
chr5:63040438-63040449
Coord C2 exon
chr5:63042582-63042752
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGCTGCATCTGCAGGAC
3' ss Score
8.79
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAACGTATATAAAGACTACAGGCAGTTGGAGTTGGCTAGCGACACTCAGGAGGAGGTGGACAGTTGGAAAGCATCCTTCTTACGAGCTGGAGTTTACCCAGAGCGCATCACT
Seq A exon
GACAAAGAGAAG
Seq C2 exon
AGTGACACCAGTGACGAGAGCAGCTCGGATGGCTTCATGCACTCCATGGATCCTCAGCTTGAGAGGCAGGTGGAGACCATCAGAAACCTTGTGGATTCCTACATGGCCATTGTCAACAAGACTGTGCGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=1.000 C2=0.336
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGACAGTTGGAAAGC
R:
ATGGAGTGCATGAAGCCATCC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]