RnoEX0029032 @ rn6
Exon Skipping
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11344629-11345606:-
Coord C1 exon
chr3:11345495-11345606
Coord A exon
chr3:11345102-11345113
Coord C2 exon
chr3:11344629-11344799
Length
12 bp
Sequences
Splice sites
3' ss Seq
GCTCTGACATGGACCTTCAGGAC
3' ss Score
5.56
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATGTCTACAAGGATTACCGGCAGCTGGAACTGGCCTGTGAGACACAGGAGGAGGTGGACAGTTGGAAGGCTTCCTTTCTGAGGGCTGGCGTGTACCCTGAGCGTGTTGGG
Seq A exon
GACAAGGAGAAA
Seq C2 exon
GCCAGTGAGACTGAGGAGAACGGCTCTGACAGCTTCATGCACTCCATGGACCCTCAGCTGGAGCGCCAGGTGGAGACCATCCGGAACCTGGTAGACTCGTACATGGCCATTGTCAACAAGACTGTACGGGATCTCATGCCCAAGACCATCATGCACCTCATGATCAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=1.000 C2=0.316
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCTTCCTTTCTGAGGGC
R:
GGGTCCATGGAGTGCATGAAG
Band lengths:
99-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]