BtaEX0011732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98870347-98871480:+
Coord C1 exon
chr11:98870347-98870458
Coord A exon
chr11:98870919-98870930
Coord C2 exon
chr11:98871310-98871480
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGTGGGCCTCCCAGGAC
3' ss Score
5.97
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAATGTCTACAAGGATTATCGGCAGCTGGAGCTGGCCTGCGAGACACAGGAGGAGGTGGATAGCTGGAAGGCCTCCTTTCTAAGGGCTGGCGTGTACCCTGAGCGTGTTGGG
Seq A exon
GACAAAGAGAAA
Seq C2 exon
GCCAGTGAGACGGAGGAGAACGGCTCGGACAGCTTCATGCACTCCATGGACCCACAGCTGGAGCGGCAGGTGGAGACCATCCGGAACTTGGTGGATTCATACATGGCCATCGTCAACAAGACTGTCCGGGACCTCATGCCCAAGACGATCATGCATCTCATGATCAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=1.000 C2=0.316
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAAGGCCTCCTTTCTA
R:
GGGTCCATGGAGTGCATGAAG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development