DreEX0027745 @ danRer10
Exon Skipping
Gene
ENSDARG00000010042 | dnm1a
Description
dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
Coordinates
chr5:1349386-1351654:+
Coord C1 exon
chr5:1349386-1349497
Coord A exon
chr5:1349617-1349628
Coord C2 exon
chr5:1351484-1351654
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTGTGCCACACCAGGAG
3' ss Score
5.57
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAACGTGTATAAGGACTACCGTCAACTGGAGCTGGCCTGTGAGAGTCAGGAAGAGGTGGACGGCTGGAAAGCTTCATTCCTGCGTGCTGGAGTTTATCCTGAGCGTGTGGTG
Seq A exon
GAGAAGGAGAAG
Seq C2 exon
AATGACGCAGGCGAAGAGAACGGTTCCGACGGATTCATGCACTCCATGGACCCTCAGCTGGAGAGGCAGGTGGAGACCATCCGAAACCTGGTGGACTCCTATATGGCCATCGTCAACAAGACCGTACGAGACCTGATACCCAAGACCATCATGCATCTGATGATCAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010042-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.260
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=69.0)
A:
NO
C2:
PF0221213=GED=PU(41.3=66.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAAAGCTTCATTCCT
R:
AGTGCATGAATCCGTCGGAAC
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]