GgaEX0006668 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5658589-5661077:-
Coord C1 exon
chr17:5660966-5661077
Coord A exon
chr17:5659864-5659875
Coord C2 exon
chr17:5658589-5658759
Length
12 bp
Sequences
Splice sites
3' ss Seq
TGCTCAAACTGACCTGCCAGGAC
3' ss Score
5.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAATGTTTACAAGGACTACCGACAGCTGGAGCTGGCCTGTGAGACCCAGGAGGAGGTGGATAGCTGGAAGGCTTCCTTCCTCCGTGCAGGCGTCTACCCAGAACGTGTTGGG
Seq A exon
GACAAGGACAAA
Seq C2 exon
GCCAGTGAAGCGGAGGAGAATGGATCGGACAGTTTCATGCACTCCATGGATCCTCAGCTGGAGAGACAAGTGGAAACGATCAGGAATCTGGTGGATTCCTACATGGCAATTGTCAACAAAACCATCAGAGACCTCATGCCGAAGACAATCATGCACCTCATGATAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=1.000 C2=0.281
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
NO
C2:
PF0221213=GED=PU(41.3=66.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGATAGCTGGAAGGCTT
R:
TGGAGTGCATGAAACTGTCCG
Band lengths:
105-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]