DreALTA0010236-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12142133-12142425:-
Coord C1 exon
chr15:12142395-12142425
Coord A exon
chr15:12142252-12142254
Coord C2 exon
chr15:12142133-12142251
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTTTGTTTTGCACCTGGAGCAG
3' ss Score
-2.61
Exon sequences
Seq C1 exon
ATGCGAAGAGCTTGGCTGAGATGCTTATCAG
Seq A exon
CAG
Seq C2 exon
TAAGAACAATCGAAGTTTTGACACTCCAGTAAAAGGCCCACCTCAGGGACCTCGACTACACATTGATATCCCACGCGTGCAGCTTCTTATTGAGGATAAAGAAGGAATCAAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-34-30,34-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTTGGCTGAGATGCT
R:
TGCACGCGTGGGATATCAATG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]