DreALTA0010236-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12142133-12142425:-
Coord C1 exon
chr15:12142395-12142425
Coord A exon
NA
Coord C2 exon
chr15:12142133-12142251
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTGTTTTGCACCTGGAGCAGTAA
3' ss Score
-0.22
Exon sequences
Seq C1 exon
ATGCGAAGAGCTTGGCTGAGATGCTTATCAG
Seq A exon
NA
Seq C2 exon
TAAGAACAATCGAAGTTTTGACACTCCAGTAAAAGGCCCACCTCAGGGACCTCGACTACACATTGATATCCCACGCGTGCAGCTTCTTATTGAGGATAAAGAAGGAATCAAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-34-30,34-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTTGGCTGAGATGCT
R:
TGCACGCGTGGGATATCAATG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]