HsaALTA1048305-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000177103 | DSCAML1
Description
DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr11:117433138-117433471:-
Coord C1 exon
chr11:117433441-117433471
Coord A exon
chr11:117433182-117433256
Coord C2 exon
chr11:117433138-117433181
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCAGTCTTTCTCCCCACAGCAA
3' ss Score
9.65
Exon sequences
Seq C1 exon
ATGCAAAGAGTTTGGCAGAAATGTTGATAAG
Seq A exon
CAAGAACAATAGAAGCTTTGACACCCCTGTGAAAGGGCCACCCCAGGGCCCACGGCTACACATTGACATCCCCAG
Seq C2 exon
GGTCCAGCTGCTCATCGAGGACAAAGAAGGCATCAAGCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103-61-83,61-82,61-81-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGAGTTTGGCAGAAATGT
R:
CCAGTTGCTTGATGCCTTCTT
Band lengths:
74-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains