GgaALTA0003813-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5316245-5316548:-
Coord C1 exon
chr24:5316518-5316548
Coord A exon
chr24:5316349-5316363
Coord C2 exon
chr24:5316245-5316348
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CGTCCCCTCTTACCTCACAGCAA
3' ss Score
9.94
Exon sequences
Seq C1 exon
ATGCCAAGAGCTTGGCAGAGATGCTGATCAG
Seq A exon
CAAGAATAACCGCAG
Seq C2 exon
CTTTGACACGCCGGTGAAGGGGCCCCCGCAAGGCCCCCGCCTGCACATCGACATCCCCCGCGTGCAGCTCCTCATCGAGGACAAGGAGGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-29-33,29-32,29-31-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCTTGGCAGAGATGCT
R:
GCCCTCCTTGTCCTCGATGAG
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]