DreALTA0010339-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3774601-3778156:+
Coord C1 exon
chr6:3774601-3774715
Coord A exon
chr6:3778066-3778098
Coord C2 exon
chr6:3778099-3778156
Length
33 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
GTGTCTGTTTCACTATTTAGTCC
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTGGATGGAAGAAAGGAAGGAGCGTCTCCCCCACAGGAAGACTCTGATCTGGAGAGAAAGAGGAGGGAGGCAGAGGCTCTGTTACAGAGCATGGGGATCACAGATGCCTCCATGG
Seq A exon
TCCCCCCTCCCATGTCCCCTTCTGCCAAATCAG
Seq C2 exon
TGGGAACCCCAAGTGAGACGGGCAGCCAGGACTCCGGAGACGGCGGGACGGGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195-2-6,2-5,2-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCCCACAGGAAGACTC
R:
CCGTCTCACTTGGGGTTCCC
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]