DreALTA0010339-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3774601-3778156:+
Coord C1 exon
chr6:3774601-3774715
Coord A exon
chr6:3778015-3778098
Coord C2 exon
chr6:3778099-3778156
Length
84 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
ATGCATGTGTGTGAGCGTAGTTC
3' ss Score
-1.44
Exon sequences
Seq C1 exon
CTGGATGGAAGAAAGGAAGGAGCGTCTCCCCCACAGGAAGACTCTGATCTGGAGAGAAAGAGGAGGGAGGCAGAGGCTCTGTTACAGAGCATGGGGATCACAGATGCCTCCATGG
Seq A exon
TTCAGCCTCTGCGTGTGGTAACAGAGGATACGTGTCTGTTTCACTATTTAGTCCCCCCTCCCATGTCCCCTTCTGCCAAATCAG
Seq C2 exon
TGGGAACCCCAAGTGAGACGGGCAGCCAGGACTCCGGAGACGGCGGGACGGGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195-2-6,2-5,2-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAAGGAAGGAGCGTC
R:
GTCTCCGGAGTCCTGGCTG
Band lengths:
151-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]